% Genome Sequence Visualization
@article{altschul1990basic,
  title={Basic local alignment search tool},
  author={Altschul, Stephen F and Gish, Warren and Miller, Webb and Myers, Eugene W and Lipman, David J},
  journal={Journal of molecular biology},
  volume={215},
  number={3},
  pages={403--410},
  year={1990},
  publisher={Elsevier}
}
@article{liao20063d,
  title={A 3D graphical representation of DNA sequences and its application},
  author={Liao, Bo and Ding, Kequan},
  journal={Theoretical Computer Science},
  volume={358},
  number={1},
  pages={56--64},
  year={2006},
  publisher={Elsevier}
}
@article{nakamura2013shape,
  title={A shape-based similarity measure for time series data with ensemble learning},
  author={Nakamura, Tetsuya and Taki, Keishi and Nomiya, Hiroki and Seki, Kazuhiro and Uehara, Kuniaki},
  journal={Pattern Analysis and Applications},
  volume={16},
  number={4},
  pages={535--548},
  year={2013},
  publisher={Springer}
}

@article{randic2003compact,
  title={Compact 2-D graphical representation of DNA},
  author={Randi{\'c}, Milan and Vra{\v{c}}ko, Marjan and Zupan, Jure and Novi{\v{c}}, Marjana},
  journal={Chemical physics letters},
  volume={373},
  number={5},
  pages={558--562},
  year={2003},
  publisher={Elsevier}
}

@article{randic2004graphical,
  title={Graphical representations of DNA as 2-D map},
  author={Randi{\'c}, Milan},
  journal={Chemical Physics Letters},
  volume={386},
  number={4},
  pages={468--471},
  year={2004},
  publisher={Elsevier}
}

@article{wu2003db,
  title={DB-Curve: a novel 2D method of DNA sequence visualization and representation},
  author={Wu, Yonghui and Liew, Alan Wee-Chung and Yan, Hong and Yang, Mengsu},
  journal={Chemical Physics Letters},
  volume={367},
  number={1},
  pages={170--176},
  year={2003},
  publisher={Elsevier}
}

@article{li2009hl,
  title={H-L curve: a novel 2D graphical representation of protein sequences},
  author={Li, Yongfan and Huang, Guohua and Liao, Bo and Liu, Zanbo},
  journal={MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY},
  volume={61},
  number={2},
  pages={519--532},
  year={2009},
  publisher={UNIV KRAGUJEVAC, FAC SCIENCE PO BOX 60, KRAGUJEVAC 34000, SERBIA}
}

@article{randic2005four,
  title={Four-color map representation of DNA or RNA sequences and their numerical characterization},
  author={Randi{\'c}, Milan and Ler{\v{s}}, Nella and Plav{\v{s}}i{\'c}, Dejan and Basak, Subhash C and Balaban, Alexandru T},
  journal={Chemical physics letters},
  volume={407},
  number={1},
  pages={205--208},
  year={2005},
  publisher={Elsevier}
}

@article{krzywinski2009circos,
  title={Circos: an information aesthetic for comparative genomics},
  author={Krzywinski, Martin and Schein, Jacqueline and Birol, Inanc and Connors, Joseph and Gascoyne, Randy and Horsman, Doug and Jones, Steven J and Marra, Marco A},
  journal={Genome research},
  volume={19},
  number={9},
  pages={1639--1645},
  year={2009},
  publisher={Cold Spring Harbor Lab}
}
@article{an2015j,
  title={J-Circos: an interactive Circos plotter},
  author={An, Jiyuan and Lai, John and Sajjanhar, Atul and Batra, Jyotsna and Wang, Chenwei and Nelson, Colleen C},
  journal={Bioinformatics},
  volume={31},
  number={9},
  pages={1463--1465},
  year={2015},
  publisher={Oxford University Press}
}

% Genome Sequence Visualization based analysis
@article{randic2003analysis,
  title={Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation},
  author={Randi{\'c}, Milan and Vra{\v{c}}ko, Marjan and Ler{\v{s}}, Nella and Plav{\v{s}}i{\'c}, Dejan},
  journal={Chemical Physics Letters},
  volume={371},
  number={1},
  pages={202--207},
  year={2003},
  publisher={Elsevier}
}

@article{randic2006novel,
  title={A novel unexpected use of a graphical representation of DNA: Graphical alignment of DNA sequences},
  author={Randi{\'c}, Milan and Zupan, Jure and Viki{\'c}-Topi{\'c}, Dra{\v{z}}en and Plav{\v{s}}i{\'c}, Dejan},
  journal={Chemical Physics Letters},
  volume={431},
  number={4},
  pages={375--379},
  year={2006},
  publisher={Elsevier}
}

@article{huang2009similarity,
  title={Similarity studies of DNA sequences based on a new 2D graphical representation},
  author={Huang, Guohua and Liao, Bo and Li, Yongfan and Yu, Yougui},
  journal={Biophysical chemistry},
  volume={143},
  number={1},
  pages={55--59},
  year={2009},
  publisher={Elsevier}
}

@article{kim1997visualization,
  title={A visualization technique for DNA walk plot using k-convex hull},
  author={Kim, Min-Ah and Lee, Eun-Jeong and Cho, Hwan-Gue and Park, Kie-Jung},
  year={1997},
  volume={5},
  number={1-3},
  pages={212-221},
  journal={Journal of WSCG},
  publisher={V{\'a}clav Skala-UNION Agency}
}

@article{da2016comparison,
  title={Comparison-specialized visualization model for whole genome sequences},
  author={Da-Young, Lee and Kyung-Rim, Kim and Taeyong, Kim and Hwan-Gue, Cho},
  year={2016},
  volume={24},
  number={2},
  pages={43-52},
  journal={Journal of WSCG},
  publisher={V{\'a}clav Skala-UNION Agency}
}

@inproceedings{2016webgl,
author={Dayoung Lee,Daegeon Kwon,Hwan-gue Cho},
title={{Web-GL based Visualization System for Whole Genomes}},
booktitle={Proceedings of KIISE},
publisher={KOREA INFORMATION SCIENCE SOCIETY},
year={2016},
pages={1414-1416},
}
}


@MastersThesis{2015opengl,
  title={Whole Genome Data Visualization and Analysis Using 3D Random Walk Plot},
  author={Daegeon Kwon},
  year={2015},
  school={Pusan National University}
}
@article{pasechnik2005dynamical,
  title={Dynamical visualization of the DNA sequence and its nucleotide content},
  author={Pasechnik, Alexey and Myll{\"a}ri, Aleksandr and Salakoski, Tapio and Myll{\"a}ri, A and Salakoski, T and Salakoski, T},
  journal={Proceedings of KRBIO},
  volume={5},
  pages={47--50},
  year={2005}
}

@inproceedings{sandes2010cudalign,
  title={CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences},
  author={Sandes, Edans Flavius O and de Melo, Alba Cristina},
  booktitle={ACM Sigplan Notices},
  volume={45},
  number={5},
  pages={137--146},
  year={2010},
  organization={ACM}
}

@article{vinga2003alignment,
  title={Alignment-free sequence comparison—a review},
  author={Vinga, Susana and Almeida, Jonas},
  journal={Bioinformatics},
  volume={19},
  number={4},
  pages={513--523},
  year={2003},
  publisher={Oxford University Press}
}